UBC RDM Workshop 4: FAIR data and SPARQLing Genomics 

Utrecht Bioinformatics CenterThe Utrecht Bioinformatics Center (UBC) performs life science research using big data analysis on DNA, genes, proteins and cells. By integrating data from various sources, we develop innovative methods that are at the foundation of solving of important problems in cancer genomics and molecular evolution. The UBC fosters and promotes the bioinformatics community at Utrecht Science Park.Data StewardshipThe Data Stewardship portfolio of the UBC contains regular open consulting hours on research data management (RDM) for members of the Utrecht bioinformatics community.For the first time, a research data management focussed workshop series consisting of four individual sessions will take place in fall and winter 2019.All Data Stewardship related events and services are provided by the Data Steward of the Center for Molecular Medicine of the UMC Utrecht, Jasmin Böhmer.

Jasmin K. Böhmer

<H2 CLASS="p1">UBC Workshop 4: FAIR data and SPARQLing Genomics</H2>
<H2 CLASS="p1">How far can you go to make your data FAIR?</H2>
 
<H3 CLASS="p2">Presentation:</H3>
This session will shortly introduce the FAIR data principles and the efforts to realise them. Showcasing the differences between FAIRness on data-set level vs. FAIRness on data-file level, the challenges and thresholds will be discussed. Lastly, one of the options to create FAIR data - namely producing <A HREF="https://www.w3.org/standards/semanticweb/data" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">linked data</A> -  will be illustrated with the example of <A HREF="https://www.w3.org/2001/sw/wiki/RDF" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">RDF</A> and <A HREF="https://www.w3.org/2001/sw/wiki/SPARQL" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">SPARQL</A>. 
 
 
<H3 CLASS="p2">Hands-On:</H3>
The first exercise offers to play around the <A HREF="https://www.ands-nectar-rds.org.au/fair-tool" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">ARDC FAIR data assessment tool </A>to understand how data from different domains differ in their FAIRness.
The second and longer interactive session will provide the SPARQLing Genomics instance of the Center for Molecular Medicine to play around with SPARQL and get an idea how RDF works. 
 
This session is wrapped up with a discussion and Q&A section.
 
 
<H2 CLASS="p1">In Detail:</H2>
Session: FAIR data and SPARQLing Genomics
Presentation: -Fair principles explained - FAIR data two ways - FAIR data applied - Fair enough?
 
Interactive Exercises: - FAIR data assessment tool exploration - SPARQLing Genomics hands-on
 
Session Plan, Thursday 19th December 2019:
15:00-16:00 
Intro                           Ice-Breaker + Grouping   Presentation                 Break                             FAIR data Exercise          Exercise Discussion
16:00-17:00
Hands-on time for SPARQLing Genomics
17:00
Snack and Drinks
 
<H2>Workshop 4 of 4</H2>
This research data management (RDM) workshop is the fouth part of a series of four. You can find the other workshops here: 1. Data Management Planning: <A HREF="https://ubc-rdm-workshop1-2019.eventbrite.nl" TARGET="_blank">https://ubc-rdm-workshop1-2019.eventbrite.nl</A> 2. Documentation Writing and ELN: <A HREF="https://ubc-rdm-workshop2-2019.eventbrite.nl" TARGET="_blank">https://ubc-rdm-workshop2-2019.eventbrite.nl</A> 3. Data Archiving and Data Publishing: <A HREF="https://ubc-rdm-workshop3-2019.eventbrite.nl" TARGET="_blank">https://ubc-rdm-workshop3-2019.eventbrite.nl</A> 
 
Header image credit: https://unsplash.com/@vansch

Universitair Medisch Centrum Utrecht

Our {communityGuidelinesLink} describe the sort of content we prohibit on Eventbrite. If you suspect an event may be in violation, you can report it to us so we can investigate.

To report other categories of prohibited or illegal content, submit {link}

UBC RDM Workshop 4: FAIR data and SPARQLing Genomics

More events from Jasmin K. Böhmer

Follow organisers to get events picked for you

UBC RDM Workshop 4: FAIR data and SPARQLing Genomics

More events from Jasmin K. Böhmer

Follow organisers to get events picked for you

You might also like...

Browse more events with different dates, prices, and formats to find your next great experience.